NanoComp report

Summary statistics

feature
General summary H9_2_4 H9_3_4 H9_4_4 HEYA8_1_4 HEYA8_2_4 HEYA8_3_3
Mean read length 1,025.7 1,031.0 1,041.8 1,006.4 986.7 1,005.4
Mean read quality 10.1 10.1 10.2 10.1 10.1 10.1
Median read length 805.0 812.0 819.0 793.0 775.0 787.0
Median read quality 11.3 11.4 11.4 11.3 11.4 11.3
Number of reads 25,990,415.0 26,661,355.0 23,772,988.0 27,541,966.0 27,155,084.0 24,418,058.0
Read length N50 1,247.0 1,231.0 1,253.0 1,143.0 1,114.0 1,132.0
STDEV read length 784.7 760.7 783.6 709.8 697.9 731.9
Total bases 26,658,830,735.0 27,487,267,637.0 24,766,107,246.0 27,717,191,395.0 26,793,370,893.0 24,549,191,362.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 18333209 (70.5%) 19944.0Mb 18990705 (71.2%) 20749.8Mb 17013013 (71.6%) 18803.1Mb 19453279 (70.6%) 20583.7Mb 19423599 (71.5%) 20086.4Mb 17356578 (71.1%) 18357.6Mb
>Q15 599798 (2.3%) 996.6Mb 588164 (2.2%) 988.0Mb 540785 (2.3%) 910.4Mb 570784 (2.1%) 918.9Mb 593823 (2.2%) 919.6Mb 485365 (2.0%) 791.3Mb
>Q20 22 (0.0%) 0.0Mb 32 (0.0%) 0.0Mb 32 (0.0%) 0.0Mb 16 (0.0%) 0.0Mb 29 (0.0%) 0.0Mb 6 (0.0%) 0.0Mb
>Q25 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q30 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 22.9 (243) 22.7 (288) 22.5 (351) 22.2 (589) 22.4 (257) 20.6 (503)
2 21.8 (284) 21.8 (471) 22.3 (303) 21.8 (595) 21.8 (156) 20.2 (236)
3 21.4 (146) 21.2 (434) 22.2 (270) 21.4 (513) 21.8 (393) 20.1 (380)
4 21.2 (602) 21.2 (343) 21.6 (233) 21.4 (479) 21.2 (211) 20.1 (205)
5 21.2 (243) 21.2 (380) 21.5 (294) 21.3 (167) 20.9 (209) 20.1 (528)
Top 5 longest reads and their mean basecall quality score
1 360421 (6.8) 420040 (3.7) 479573 (3.8) 511241 (6.2) 527046 (7.9) 615873 (11.3)
2 328832 (5.2) 296468 (3.1) 406113 (3.6) 418712 (8.5) 284538 (5.9) 543465 (4.0)
3 234353 (4.2) 294030 (3.8) 294690 (4.0) 293430 (6.3) 282840 (5.4) 411550 (3.9)
4 230999 (5.0) 224502 (5.4) 269667 (5.3) 218968 (5.9) 275873 (7.5) 267342 (3.3)
5 216349 (3.3) 211121 (5.0) 262977 (5.3) 185502 (5.1) 251671 (6.6) 223831 (6.5)

Plots

Comparing number of reads

Comparing throughput in bases

Comparing read length N50

Comparing read length

Comparing log-transformed read length

Comparing average base call quality score

Histogram of read lengths

Normalized histogram of read lengths

Weighted histogram of read lengths

Histogram of log transformed read lengths

Normalized histogram of log transformed read lengths

Weighted histogram of log transformed read lengths